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Summary

Unique Genes: 50702
Unique Isoforms: 149434

Gene classification

Isoform Classification

Splice Junction Classification

Gene Characterization

Number of Isoforms per Gene

Distribution of Isoforms per Gene

Kown vs Novel Genes

Transcript Length

Classification

Normalized Classification

All Transcripts

By Structural Category

Mono- vs Multi-Exons

Exon Structure

Structural Isoform Characterization

Isoform Distribution

Across Structural Categories

Across FSM

Across ISM

Across NNC

Across NIC

Across Genic Genomic

Across Antisense

Across Fusion

Across Intergenic

Transcript Lengths

By Structural Classification

By Subcategory

Exon Counts by Structural Classification

By Structural Classification

By Subcategory

Matched Reference Transcripts

Length Distribution

Exon Count Distribution

Splice Junction Characterization

Distribution

Distribution of Splice Junctions by Structural Classification

Distribution of Transcripts by Splice Junctions

RT−Switching

RT−Switching All Junctions

Unique Junctions RT−switching

Comparison With Annotated TSS and TTS

Distance to Annotated Polyadenylation Site

For FSM

For ISM

Distance to Annotated Transcription Start Site

For FSM

For ISM

Comparison With Annotated TSS and TTS by Subcategories

Distance to Annotated Polyadenylation Site

Alternative 3’End for FSM

Alternative 3’5’End for FSM

Alternative 5’End for FSM

Reference Match for FSM

Alternative 3’End for ISM

Alternative 3’5’End for ISM

Alternative 5’End for ISM

Reference Match for ISM

Distance to Annotated Transcription Start Site

Alternative 3’End for FSM

Alternative 3’5’End for FSM

Alternative 5’End for FSM

Reference Match for FSM

Alternative 3’End for ISM

Alternative 3’5’End for ISM

Alternative 5’End for ISM

Reference Match for ISM

PolyA Distance Analysis

PolyA Distance Analysis by categories

PolyA Distance Analysis by subcategories

CAGE distances analysis

Multi-exonic FSM

Distance to CAGE peak of multi-exonic FSM

Multi-exonic ISM

Distance to CAGE peak of multi-exonic ISM

Multi-exonic NIC/NNC

Distance to CAGE peak of multi-exonic NIC

Distance to CAGE peak of multi-exonic NNC

CAGE Detected(Number)

Redundancy Analysis

Only FSM

Only FSM

FSM with CAGE support

FSM with a polyA motif found

FSM with CAGE support and polyA motif

Only ISM

Only ISM

ISM with CAGE support

ISM with a polyA motif found

ISM with CAGE support and polyA motif

FSM and ISM

FSM and ISM

FSM and ISM with CAGE support

FSM and ISM with a polyA motif found

FSM and ISM with CAGE support and polyA motif

Intra-Priming Quality Check

By Structural Category

Mono- vs Multi-Exon

Coding vs Non-Coding

Features of Bad Quality

RT-switching

Junctions

Non-Canonical Junctions

Structural Categories

Quality Control Attributes Across Structural Categories

Nonsense-Mediated Decay by Structural Category

Features of Good Quality

Support Percentages

CAGE Support

Annotation support

PolyA support

Support Percentages

Junctions

Attributes

Good Quality Control Attributes